2025

Fauzi, M. Qanita, N.G., Yuwanitaa, M.R., Wusono, A.D., Rahayu, A.A., Amirudin, F.A., Firdaus, M.E.R., Cahyani, N.K.D., Han, J.H. (2025). Plasmodium knowlesi and global changes: socio-ecological drivers and challanges. Malaria Journal https://doi.org/10.1186/s12936-025-05687-x

Oktaviana, H.A., Tan, M.P., Cahyani, N.K.D., Budiharjo, A., Yusoff, N.I.S.M. (2025). 18s DNA Barcoding and Phylogenetic Analysis of Marine Macroalae from UMT Beach, Kuala Terengganu, Malaysia. UMT Journal of Undergraduate Research 7(2): 130-138 https://doi.org/10.46754/umtjur.v7i2.583

Astuti, Y.D., Nursalim, N., Malik, M.D.A., Syakal, E.R., Maslukah, L., Wijaya, Y.J., Putranto, R.T., Krisna, H.N., Mustaqim, I., Susanti, A.F.S., Susanto, R.D., Cahyani, N.K.D., Wirasatrya, A. (2025). Unveiling deep-sea fish communities through eDNA analysis during extreme upwelling events in Pantar Strait, Indonesia. Regional Studies in Marine Sciences 90: 104536. https://doi.org/10.1016/j.rsma.2025.104536

Al Falah, M. H., Soeprobowati, T. R., Hadiyanto, H., Rahim, A., Jumari, J., Khotimperwati, L., Cahyani, N. K. D., Wojewódka-Przybył, M., Kruszewski, Ł., & Rydelek, P. (2025). Environmental DNA reveals protist biodiversity in mangrove sediments of Java and Madura, Indonesia. Biodiversitas, 26(10), 5211-5225.  https://doi.org/10.13057/biodiv/d261035

Nuranindita, R., Hitipew, D., Raharjo, M., Cahyani, N.K.D., Fauzi, M. (2025). Genetic Diversity and Population Structure of Rattus rattus and Rattus tanezumi in Sporadic Leptospirosis Areas of Central Java, Indonesia. Journal of Communicable Diseases 57(3): 78-88 https://doi.org/10.24321/0019.5138.202571

Prasetia, I.N.D., Amelia, J.M., Sitepu, G.S., Maharani, M.D.K., Wulandari, D., Ampou, E.E., Malik, M.D.A., Nursalim, N., Kholilah, N., Cahyani, N.K.D. (2025). Applications of environmental DNA for marine biodiversity monitoring in Sumberkima Village, Bali, Indonesia. Biodiversitas 25(8): 3939-3951 https://doi.org/10.13057/biodiv/d260824

Kristiana, R., Cahyani, N.K.D., Jin, Y., Mudianta, I.W., Putri, F.R., Halisah, K.A.Z., Wang, M.X., Guo, Y.W., Li, X.W., Radjasa, O.K. (2025). Antibacterial metabolites from a heterobranchia-associated bacteria and their prey from Bali, Indonesia. Current Research in Microbial Sciences 9: 100448. https://doi.org/10.1016/j.crmicr.2025.100448

Soeprobowati, T.R., Hadi, M., Jumari, J., Rahadian, R., Cahyani, N.K.D., Haniyyah, H.A., Choirul, M., Iriyanti, M.A., Gell, P. (2025). Find the Future from th past: Diatoms as Bioindicator of Water Quality. Proceedings of The 3rd International Conference on Climate Change and Ocean Renewable Energy: Climate Change and Ocean Renewable Energy. Springer Nature;163 https://doi.org/10.1007/978-3-031-93887-0_16

Aisyah, S.Z., Zamani, N.P., Cahyani, N.K.D., Elfahmi, S., Andriani, Y., Arafat, D., Bashari, M.H., Hanif, N., Iqbal Sani, L.M., Ayu, I.P., Akbar, N., Subhan, B. (2025). Challenges in Molecular and Morphological Identificaion of Sponge Species in Raja Ampat. Ilmu Kelautan: Indonesian Journal of Marine Sciences 30(1):p115 https://doi.org/10.14710/ik.ijms.30.1.115-125

Malik, M.D.A., Cahyani, N.K.D., Anggoro, A.W. (2025). DBP metabarcoding Pipeline (for metabarcoding data using nanopore) v.1. protocols.io https://dx.doi.org/10.17504/protocols.io.j8nlk94rxv5r/v1

Irianto, M.A., Aulya,M., Cahyani, N.K.D., Gell, P., Soeprobowati, T.R. (2025). Protist Community Diversity using the Environment DNA (eDNA) Method with the 18S rRNA Gene in Balekambang Lake Sediment, Dieng, Central Java. Bio Web of Conference 196. 03001. https://doi.org/10.1051/bioconf/202519603001

Malik, M.D.A., Ambariyanto, A., Hartati, R., Nursalim, N., Kholilah, N., Kurniasih, E.M., Anggoro, A.W., Prasetia, R., Syamsyuni, Y., Muh, F., Cahyani, N.K.D. (2025). eDNA uncovers hidden fish diversity in the coral reef ecosystems of Karimunjawa National Park, Indonesia. Regional Studies in Marine Science 81: 103945. https://doi.org/10.1016/j.rsma.2024.103945

Aisyah, S.Z., Zamani, N.P., Cahyani, N.K.D., Elfahmi., Syafrizayanti., Andriani, Y., Arafat, D., Bashari, M.H., Hanif, N., Sani, L.M.I., Ayu, I.P., Akbar, N. & Subhan, B. Challanges in Molecular and Morphological Identification of Sponge Species in Raja Ampat. IJMS 30(1): 115-125 pp. https://doi.org/10.14710/ik.ijms.30.1.115-125

Joesidawati, M.I., Nursalim, N., Kholilah, N., Wibowo, M.E. & Cahyani, N.K.D. (2025). DNA barcoding of Shark and Ray Species from Bawean and Masalembu Waters East Java. JIPK 17(2): 498-511 https://doi.org/10.20473/jipk.v17i2.64873

Murwani, R., Sembiring, A., Cahyani, N.K.D., Anggoro, A.W., Kurniasih, E.M., Budiharjo, A., Ambariyanto, A. (2025). Unveiling Microbiome Diversity and Abundance in the Ceca and Intentine of Freshly Slaughtered Market-Sold Kampung Chickens. Biodiversitas 26(2): 909-919 pp. https://doi.org/10.13057/biodiv/d260240

Kholillah, N., Kurniatami, G.T., Kurniasih, E.M., Nursalim, N., Janarkho, G.F., Ambariyanto, A., Wijayanti, D.P., Putro, S.P., Cahyani, N.K.D. (2025). Genetic Analysis on Horseshoe Crab for Phylogenetic Tree Study from Jambi, Bangka Belitung, Central Java, and East Java Province, Indonesia. JKT 28(2): 195-202. https://doi.org/10.14710/jkt.v28i2.25623

Nursalim, N., Kurniasih, M.E., Kholillah, N., Kurniatami, G.T., Andadari, R.G., Oktaviana, H.A., Kholifah, R.W.N., Janarkho, G.F., Mahardini, A., Cahyani, N.K.D. (2025). Uncovering the Brittle Star’s Genetic Diversity from Kalimantan and Bali. IOP Conference Series: Earth and Environmental Science, 1496: 012025. https://doi.org/10.1088/1755-1315/1496/1/012025

Banjarsari, A.A., Subhan, B., Zamani, N.P., Cahyani, N.K.D., Arafat, D., Ayu, I.P., Lestari. (2025). Bibliometric analysis: Environmental DNA (eDNA) methods in marine biodiversity research in the world and Indonesia. BIO Web of Conferences 147, 01013. https://doi.org/10.1051/bioconf/202414701013

2024

Mudianta, I. W., Siregar, J. E., Rizki, A. F. M., Azmi, W. A., Pravitasari, N. E., Gholam, G. M., Putri, F. R., Kristiana, R., Cahyani, N. K. D., Artika, I. M. (2024). Expanding the occurrence of antimalarial metabolites in dorid nudibranch Hypselodoris tryoni. Biochemical and Biophysical Research Communications. 150921, ISSN 0006-291X. https://doi.org/10.1016/j.bbrc.2024.150921.

Fahma, T.L.N., Cahyani, N.K.D., Jumari, Hariyati, R., Soeprobowati, T.R. (2024). Environmental DNA Approach to Identify Protists Community in Sediment of Balekambang Lake, Indonesia, Using 18S rRNA Gene. In: Haddout, S., Priya, K., Hoguane, A.M. (eds). Proceedings of The 2nd International Conference on Climate Change and Ocean Renewable Energy. CCORE 2022. Springer Proceedings in Earth and Environmental Sciences. Springer, Cham. https://doi.org/10.1007/978-3-031-71555-6_25.

Hirsch, S., Acharya-Patel, N., Amamoo, P. A., Borrero-Pérez, G. H., Cahyani, N. K. D., Ginigini, J. G. M., Hurley, K. K. C., Lopes-Lima, M., Lopez, M. L., Mapholi, N., Ouattara, K. N., Pazmiño, D. A., Rii, Y., Thompson, F., von der Heyden, S., Watsa, M., Yepes-Narvaez, V., Allan, E., Kelly, R. (2024). Centering accessibility, increasing capacity, and fostering innovation in the development of international eDNA standards. Metabarcoding & Metagenomics 8: 259–276 (2024). https://doi.org/10.3897/mbmg.8.126058.

N.P.D. Pertiwi, M.D. Al Malik, A. Sembiring, N.L.A. Yusmalinda, E.Y. Ningsih, N.K.D. Cahyani, A.W. Anggoro, K.A.A. Rahim, C. Meyer, B. Collette, A. Collins, I.A. Astarini. (2024). Population structure of longtail tuna (Thunnus tonggol) within and across Indonesia’s fisheries management areas (FMAs) and neighboring countries based on mitochondrial control region, Regional Studies in Marine Science, Volume 78, 103778, ISSN 2352-4855. https://doi.org/10.1016/j.rsma.2024.103778

Halisah, K. A. Z., Fitri, A., Irianto, S. N., Aulya, M., Sakti, B., Sanrina, S., Harmadi, P., Maha, N. S. S., and Cahyani, N.K.D. (2024). Identifikasi Spesies Ikan Laut Menggunakan Teknik DNA Barcoding. Bioma : Berkala Ilmiah Biologi, [Online]. Volume 26(1), pp. 43-51. https://doi.org/10.14710/bioma.2024.62478

Wibowo K, Cahyani NKD, Larashati S, Afrisal M, Wahyudewantoro G, Oktaviyani S, Kusumah RV. (2024). Range extension of Blackstripe Lizardfish, Synodus nigrotaeniatus Allen, Erdmann & Peristiwady, 2017 (Actinopterygii, Aulopiformes, Synodontidae), from Jakarta Bay, Indonesia. 2024. Check List 20(3): 601-606. https://doi.org/10.15560/20.3.601

Limmon, G. V., Wibowo, K., Priyadi, A., Cahyani, N.K.D., Kusumah, R. V., Novianti, E. (2024). Distinctive color variation in Rhinolepadichthys geminus (Gobiesocidae: Diademichthyinae) from Alor Islands, Indonesia: morphological and molecular insights. Brazilian Journal of Biology, 2024, vol. 84, e279558. https://doi.org/10.1590/1519-6984.279558

Murwani, R., Anggraeni, R., Setiawan, G.N.A., Astari, P.D., Cahyani, N.K.D., Sibero, M.T., Ambariyanto, A. (2024). Lactic Acid Bacteria Isolates and the Microbiome of Cincalok, Tempoyak, and Mandai: A Traditional Fermented Food from Kalimantan Island, Indonesia. International Journal of Food Science, vol. 2024, Article ID 6589766, 11 pages, doi. https://doi.org/10.1155/2024/6589766

Cahyani, N,K,D., Anggoro, AW., Al Malik, MD., Subhan, B., Sani, LMI., Madduppa, H. (2024). Inventorizing marine biodiversity using eDNA data from Indonesian coral reefs: Comparative high throughput analysis using different bioinformatic pipelines. Marine Biodiversity. 54, 39 (2024). https://doi.org/10.1007/s12526-024-01432-w

Al Malik, M.D., Putra, M.I.H., Topan, E., N.L.A. Yusmalinda., N.P.D. Pertiwi., Y.F. Syamsuni., N.K.D. Cahyani., E.Y. Artiningsih., S. Lewis., L.N.L. Toruan., M.G. Salim., F. Tawang., F.A. Alghozali., D. Prabuning and A. Sembiring. (2024). Population structure of endangered spinetail devil ray (Mobula mobular) in the Lesser Sunda Seascape, Indonesia, revealed using microsatellite and mitochondrial DNA. Aquat Sci 86, 6 . https://doi.org/10.1007/s00027-023-01020-3

2023

Joesidawati, M. I., Nursalim, N., Kholilah, N., Kurniasih, E. M., Cahyani, N. K. D., Ambariyanto, A. (2023). DNA Barcoding of Anchovy in Tuban Regency as Database of Indonesian Marine Genetic Diversity. ILMU KELAUTAN: Indonesian Journal of Marine Sciences, 28 (4), 383-391. https://doi.org/10.14710/ik.ijms.28.4.383-391

Cahyani, N.K.D., Kasanah, N., Kurna, D.S, and Hamman, M.T. (2023). Profiling Prokaryotic Communities and Aaptamines of Sponge Aaptos suberitoides from Tulamben, Bali. Mar Biotechnol. https://doi.org/10.1007/s10126-023-10268-7

Soeprobowati, T.R., Jumari, J., Hidayat, J.W., Muhammad, F., Al Falah, M.H., Cahyani, N.K.D., and Gell, P. (2023). Water Quality Status of Mangrove Ecosystem in Bedono, Sayung, Demak, Central Java. Pollution, 9(4), 1374-1385. https://doi.org/10.22059/zpoll.2023.355899.1803

Sembiring, A., Anggoro, A.W., Cahyani, N.K.D., Pertiwi, N.P.D., Yusmalinda, N.L.A., Momigliano, P., Astarini, I.A., Gautama, D.A., Al Malik, M.D., Mahardika, I.G.N. and Liu, S.V., (2023). The Genetic Connectivity of the Silky Shark (Carcharhinus falciformis) across Indonesia, Regional Studies in Marine Science. https://doi.org/10.1016/j.rsma.2023.103230

Joesidawati, M,I., Nursalim, N., Kholilah, N., Kurniasih, E,M., Cahyani, N,K,D., Ambariyanto, A. (2023). Utilizing DNA barcoding approach to study the diversity of the blue swimming crab from Tuban District, East Java, Indonesia. Biodiversitas 24: 4731-4737. https://doi.org/10.13057/biodiv/d240913

Cahyani, NKD., Widiastuti, KA., Fauzan, MF., Zakky, Q., Hartono, IH., Ramadhan, DBN., Riyanto, A., Hamidy, A. (2023). Population Study of Tokay Gecko (Gekko gecko) in Bali Province, Indonesia. Jurnal Biologi Indonesia 19(2): 125-133. https://doi.org/10.47349/jbi/19022023/125

Kuncoro, I., Zamani, N.P., Subhan, B., Cahyani, N.K.D. (2023). eDNA assessment of scleractinian diversity and distribution in Lemukutan Island, Indonesia. Biodiversitas. 24:7, 4185-4191. https://doi.org/10.13057/biodiv/d240758

Amin, M., Pramujisunu, Y., Cahyani, N.K.D. Mukti, A.T., Lamid, M., Ali, M., Eroldogan, O.T. (2023). The structure, composition, and predicted microbiome functional genes in Pacific white shrimp (Litopenaeus vannamei) grow-out ponds with different survival rates through high-throughput sequencing. Aquat Sci. 85, 84. https://doi.org/10.1007/s00027-023-00979-3

Sembiring, A., Al Malik, M.D., Wahyudi, A., Cahyani, N.K.D.C., Pertiwi, N.P.D., Yusmalinda, N.L.A., Kurniasih, E.M., Enex Yuni Artiningsih, E.Y, and Anggoro, A.W. (2023). Utilizing the Autonomous Reef Monitoring Structure (ARMS) to study the temporal variation of benthic community on coral reef ecosystems in Pemuteran, Bali, Indonesia. Regional Studies in Marine Science. https://doi.org/10.1016/j.rsma.2023.102925

Insafitri., Nursalim, N., Kholilah, N., Kurniasih, E,M., Cahyani, N,K,D., Nugraha, W,A., Ambariyanto, A. (2023). DNA barcode of seven species coral from Sepulu, Madura Island, Indonesia. Biodiversitas 24: 317-323 https://doi.org/10.13057/biodiv/d240138

2022

Nursalim N., Trianto, A., Cahyani N.K.D., Kholilah, N., Janarkho, G,F., Hardianto, E., and Subagiyo. (2023). Genetic and Morphological Variation of the Redbelly Yellow Tail Fusilier, Caesio cuning (Bloch , 1971) from the Nyamuk Waters , Karimunjawa Archipelago. Indonesian Journal of Marine Sciences. 2022;27(4):341–8. https://doi.org/10.14710/ik.ijms.27.4.341-348